<?xml version="1.0" encoding="UTF-8"?>
<!-- generator="wordpress/2.3.3" -->
<rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	>

<channel>
	<title>Proteomics Portal</title>
	<link>http://biotechsupportgroup.net/proteomics</link>
	<description></description>
	<pubDate>Tue, 11 Mar 2008 02:08:49 +0000</pubDate>
	<generator>http://wordpress.org/?v=2.3.3</generator>
	<language>en</language>
			<item>
		<title>The &#8216;Human Proteinpedia&#8217;</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/the-human-proteinpedia/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/the-human-proteinpedia/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:08:49 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/the-human-proteinpedia/</guid>
		<description><![CDATA[In today’s day and age, technological advances have made data generation easy but processing, analysis and interpretation just as big a challenge.  A researcher at the Johns Hopkins Institute of Genetic Medicine has led the effort to compile to date the largest free resource of experimental information about human proteins. Reporting in the February issue [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span style="font-size: 11pt">In today’s day and age, technological advances have made data generation easy but processing, analysis and interpretation just as big a challenge.<span>  </span>A researcher at the Johns Hopkins Institute of Genetic Medicine has led the effort to compile to date the largest free resource of experimental information about human proteins. Reporting in the February issue of Nature Biotechnology, the research team describes how this will help all researchers around the globe to speed their research projects.<span>  </span>The newly created repository incorporates easy-to-use web forms so that all researchers can contribute and share data easily.<span>  </span>The project was made possible with scientists and software developers at the Institute of Bioinformatics, a nonprofit institute in Bangalore, India founded in 2002.<span>  </span>Like the online encyclopedia Wikipedia, Human Proteinpedia allows any researcher to contribute and edit their data as their research progresses. Researchers will be able to quickly review what has been discovered by others about their protein of interest, speeding their own work.<span>  </span>Human Proteinpedia contains information on when and where specific proteins are expressed or not, including in cells and tissues from diseases such as cancers; how the proteins are modified; which other proteins they interact with and much more. The repository includes only experimental data and doesn’t include computer-generated predictions, which may not turn out to be real. The current version of Human Proteinpedia compiles data provided by more than 71 laboratories from all over the world and contains entries for more than 15,230 human proteins.<span>  </span>The hope is that the scientific community from all across the globe will come together to contribute data generated in individual laboratories and that in the future companies like Google and Microsoft will be involved in enabling such data sharing and dissemination for biological data.<span>  </span>This will not only improve the quality of the data but also increase the pace at which data is collected in a common repository.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=29&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_29"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/the-human-proteinpedia/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Single Gene Defect Causing Immune Deficiency and Balance Disorder</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/single-gene-defect-causing-immune-deficiency-and-balance-disorder/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/single-gene-defect-causing-immune-deficiency-and-balance-disorder/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:08:10 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/single-gene-defect-causing-immune-deficiency-and-balance-disorder/</guid>
		<description><![CDATA[A genetic defect that causes a severe immune deficiency in humans may also produce balance disorders, according to a new study by researchers at the University of Iowa published in the Journal of Clinical Investigation.  The team studied the effect of elimination of the p22phox gene in mice models.  Disruption of this protein causes a [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span class="defaultlrg"><span style="font-family: 'Times New Roman','serif'">A genetic defect that causes a severe immune deficiency in humans may also produce balance disorders, according to a new study by researchers at the University of Iowa published in the Journal of Clinical Investigation.<span>  </span>The team studied the effect of elimination of the p22phox gene in mice models.<span>  </span>Disruption of this protein causes a form of chronic granulomatous disease (CGD) &#8212; a severe immune deficiency &#8212; in humans.<span>  </span>The study showed that mice without p22phox develop an immune deficiency that mimics human CGD.<span>   </span>In addition, they also discovered that the gene defect produces a severe balance disorder in the mice caused by loss of gravity-sensing crystals in the inner ear.<span>  </span>Unlike normal mice that quickly learned how to walk on a rotating rod without falling off, the mutant mice indefinately fell off within a few seconds.<span>   </span>Furthermore, the study showed that activity of nerve cells in the inner ear responsible for sending gravity signals to the brain was absent in the mutant mice.<span>  </span><o:p></o:p></span></span></p>
<p class="MsoNormal" style="text-align: justify"><span class="defaultlrg"><span style="font-family: 'Times New Roman','serif'">P22phox is emerging as a critical subunit of a family of enzymes that produce reactive oxygen species (ROS).<span>   </span>ROS were simply thought of as destructive molecules that can kill infecting bacteria but also damage human cells. More recently, however, ROS have been shown to play a key role in many normal cell processes, including development and blood pressure regulation. The group of enzymes that produce ROS are called NADPH oxidases (Nox).<span>   </span>Disruption of these enzymes has been implicated in a range of diseases, including cardiovascular and neurodegenerative diseases as well as immune deficiencies like CGD.<o:p></o:p></span></span></p>
<p class="MsoNormal" style="text-align: justify"><span class="defaultlrg"><span style="font-family: 'Times New Roman','serif'">In this study, although inner ear cells looked normal in the mutant mice, the researchers discovered that otoconia &#8212; tiny calcium carbonate crystals that are essential for sensing gravity &#8212; do not form in the inner ears of these mice.<span>   </span>It is speculated that the superoxide radicals under the right pH and calcium concentrations promote such crystal formation.<span>  </span>Restoring the normal gene to the mutant mice rescued otoconial production and prevented the balance disorder. However, although the treatment did improve the mice&#8217;s immune response, the partial restoration of gene expression was not sufficient to cure the immune deficiency completely.</span></span><span style="font-family: 'Times New Roman','serif'"><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=28&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_28"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/single-gene-defect-causing-immune-deficiency-and-balance-disorder/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Reduce Breast Cancer Recurrence</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/reduce-breast-cancer-recurrence/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/reduce-breast-cancer-recurrence/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:07:13 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/reduce-breast-cancer-recurrence/</guid>
		<description><![CDATA[A new test that examines large sections of the sentinel lymph node- the first place breast cancer typically spreads- for genes that re expressed only by breast cancer could reduce the risk of recurrence and multiple surgeries.  The sentinel node, located in the armpit, filters lymphatic fluid from the breast.  The new assay is being [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span class="defaultlrg"><span style="font-family: 'Times New Roman','serif'">A new test that examines large sections of the sentinel lymph node- </span></span><span style="font-family: 'Times New Roman','serif'">the first place breast cancer typically spreads-<span class="defaultlrg"> for genes that re expressed only by breast cancer could reduce the risk of recurrence and multiple surgeries.<span>  </span></span></span><span style="font-family: 'Times New Roman','serif'">The sentinel node, located in the armpit, filters lymphatic fluid from the breast. <span> </span></span><span style="font-family: 'Times New Roman','serif'">The new assay is being used at the Medical College of Georgia (MCG) to examine half of the tissue in the sentinel lymph node.<span>  </span></span><span style="font-family: 'Times New Roman','serif'">Done during a lumpectomy</span><span style="font-family: 'Times New Roman','serif'">, the sample represents more than 10 times the amount of tissue examined in traditional biopsies at the present time.<span>  </span></span><span style="font-family: 'Times New Roman','serif'">Since the test examines the tissue with molecular tools it is more sensitive, decreasing the number of false negatives. The presence of excessive amounts of the proteins mamoglobin and cytokeratin 19, both genes that are expressed more in breast cancer tissue, would indicate that the cancer has metastasized. MCG is the first place in Georgia to offer the test, which <span>Time Magazine</span> named one of the top-10 medical breakthroughs of 2007<span>. </span>When performing a traditional sentinel node biopsy, a surgeon removes a node, then the pathologist would cut that section in half and cut that section to a quarter of the original sample size.<span>  </span>That piece is then cut into wafer-thin slices from those sections, frozen, stained, and examined for cancer cells under a microscope. This technique, called frozen section, would be done during the lumpectomy surgery. If the tissue is positive for cancer cells, the surgeon removes more nodes from the patient, but if it is negative, the surgery is over.<span>  </span>The problem with that type of test is that the pathologists review more tissue slices during a confirmatory second test, called a permanent section and done a day later.<span>  </span>Permanent section tests are done the day after surgery because the tissue is set with a fixative that causes proteins in cells to harden for better examination.<span>  </span>The cancer cells may not have been present in the part of the node that we looked at the day before in the frozen section, but on the second day, cancer may be found in the other section. At the present time nearly 20 percent of women with negative nodes confirmed by a traditional biopsy end up having a recurrence and metastasis.<span>  </span>The new test performs both the traditional test and the new molecular test in parallel to provide the best care for our patients.<span>  </span>The larger the sample the better the chance of detecting the cancer during the intraoperative test. The test when approved will help provide better care to patients and better overall treatment.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=27&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_27"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/reduce-breast-cancer-recurrence/feed/</wfw:commentRss>
		</item>
		<item>
		<title>What a Moss protein has to do with Alzheimer ’s disease</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/what-a-moss-protein-has-to-do-with-alzheimer-%e2%80%99s-disease/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/what-a-moss-protein-has-to-do-with-alzheimer-%e2%80%99s-disease/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:06:31 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/what-a-moss-protein-has-to-do-with-alzheimer-%e2%80%99s-disease/</guid>
		<description><![CDATA[The gene presenilin (PS) in mammals provides the catalytic activity for an enzyme called gamma secretase, which cleaves, or cuts, important proteins Notch, Erb4 and the amyloid precursor protein (APP), all key components of communication channels that cells use to arbitrate functions during development. At the present time mutations in two mammalian genes are known [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span style="font-size: 11pt">The gene presenilin (PS) in mammals provides the catalytic activity for an enzyme called gamma secretase, which cleaves, or cuts, important proteins Notch, Erb4 and the amyloid precursor protein (APP), all key components of communication channels that cells use to arbitrate functions during development. At the present time mutations in two mammalian genes are known to cause an earlier onset of Alzheimer&#8217;s. One is APP and the other is PS protein.<span>  </span>The enzyme gamma secretase contains PS at its core and works to dispose of proteins stuck in the cellular membrane. Gamma secretase mediates two cellular decisions- one is to cut APP and generate amyloid associated with Alzheimer&#8217;s and the other is to cut the Notch protein in response to specific stimuli. Notch is then free to enter the nucleus of cells where it partakes in regulating normal gene expression. Without Notch activity, a mammal has no chance of living. Notch is a part of a short-range mammalian communication channel, and for years it has been known to have a working relationship with PS.<span>  </span><span class="defaultlrg">However, Notch is absent in plant cells and the function of PS in plants was not elucidated until recently.<span>  </span>The moss plant </span><em>Physcomitrella patens</em><span class="defaultlrg"> and its PS gene was studied in the laboratory of Ralph S. Quatrano, Ph.D.</span> When the PS gene was removed the result was an obvious change — a phenotype. Moss lacking PS looked different, growing with straight, rigid filaments instead of curved and bent filaments like the parent moss with the PS gene intact. In moss, the mutant phenotypes suggest PS might play a role in signal gathering, cytoskeleton organization and/or cell wall composition and organization.<span>  </span><span class="defaultlrg">Inserting the moss PS gene in mammalian cells resulted in reversing some of the losses experienced by animal cells lacking PS function, testifying that the human and moss proteins had an evolutionary conserved function and structure.<span>  </span></span>Importantly, the human PS protein acted in plant cells even if its enzymatic activity was removed by mutation indicating that PS proteins in mammals can perform other functions besides the enzymatic ones, that is, outside its role as gamma secretase. The data from this outstanding plant model can be used not only to understand some of the off-target affects during Alzheimer&#8217;s Disease therapy, but also to unravel novel interactions and pathways in plants.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=26&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_26"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/what-a-moss-protein-has-to-do-with-alzheimer-%e2%80%99s-disease/feed/</wfw:commentRss>
		</item>
		<item>
		<title>The Proteomics Jungle</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/the-proteomics-jungle/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/the-proteomics-jungle/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:06:08 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/the-proteomics-jungle/</guid>
		<description><![CDATA[Data processing, validation, standardizations, and protein quantification are few of the brewing issues surrounding the field of human genome and proteomics.  There is a dire need for standardized analysis methods and a workflow focus.  Various types of software warehousing and analysis methods should help address the different issues in a flexible manner.  Creating a central [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal">Data processing, validation, standardizations, and protein quantification are few of the brewing issues surrounding the field of human genome and proteomics.<span>  </span>There is a dire need for standardized analysis methods and a workflow focus.<span>  </span>Various types of software warehousing and analysis methods should help address the different issues in a flexible manner.<span>  </span>Creating a central database would provide a good solution to compare experiments to one another and to extract knowledge based on past experiments.<span>  </span>One such database and search engine has been created for comparing peptide identification from various experiments (ESI and MALDI) to produce an integrated result showing you the possible proteins.<span>  </span>It can be expected that in the near future all protein identifications will come with a statistical significance so everyone can judge the validity of the information.<span>  </span>However, making this method standardized and reproducible will be key.<span>  </span>However, much like in the genomics arena, the issue in bioinformatics will be the opulence of raw data and the need for fast multi-resolution<span>  </span>visualization tools.<span>  </span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=25&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_25"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/the-proteomics-jungle/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Clues as to how the Poxvirus evades the immune system</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/clues-as-to-how-the-poxvirus-evades-the-immune-system/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/clues-as-to-how-the-poxvirus-evades-the-immune-system/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:05:32 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/clues-as-to-how-the-poxvirus-evades-the-immune-system/</guid>
		<description><![CDATA[Scientists at have uncovered important new information about a key protein that allows viruses such as smallpox to replicate, wreak havoc on the immune system and work to subvert our immune system.  The research explores the interferon-gamma binding protein found in the mousepox virus – one of the family of viruses that also includes smallpox, [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span style="font-size: 11pt">Scientists at have uncovered important new information about a key protein that allows viruses such as smallpox to replicate, wreak havoc on the immune system and work to subvert our immune system.<span>  </span><span class="defaultlrg">The research explores the interferon-gamma binding protein found in the mousepox virus – one of the family of viruses that also includes smallpox, monkeypox and cowpox, and found that it is notorious for helping the virus replicate.<span>  </span></span>Normally when a virus enters the bloodstream, the immune system responds by producing a substance called interferon-gamma, which assists the development of the immune response that’s responsible for ridding the body of the virus. Poxviruses, however, all come encoded with a potent weapon to evade the immune system: interferon-gamma binding protein. As its name implies, the protein literally binds to interferon-gamma and immobilizes it, preventing it from marshalling the immune system’s defenses. The poxvirus is then able to replicate and cause immense damage.<span>  </span>Decoding the molecular structure and function of this binding protein will have tremendous impact in the development of drugs for various immunologic and inflammatory disease, such as atherosclerotic heart disease, Inflammatory bowel disease, rheumatoid arthritis, etc. <o:p></o:p></span></p>
<p style="text-align: justify"><span style="font-size: 11pt"><o:p> </o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=24&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_24"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/clues-as-to-how-the-poxvirus-evades-the-immune-system/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Phase 0: A trial before trials</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/phase-0-a-trial-before-trials/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/phase-0-a-trial-before-trials/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:04:04 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/phase-0-a-trial-before-trials/</guid>
		<description><![CDATA[A new concept these days in experimental drug development is ‘Phase 0.’  Simply put it means a small trial in a limited number of subjects or patients who are highly controlled to get an assessment of the pharmacological activity for compounds.  The hope is to created innovative ways to establish proof-of –concept for new mechanisms [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'">A new concept these days in experimental drug development is ‘Phase 0.’<span>  </span>Simply put it means a small trial in a limited number of subjects or patients who are highly controlled to get an assessment of the pharmacological activity for compounds.<span>  </span>The hope is to created innovative ways to establish proof-of –concept for new mechanisms by exploring clinical models that could yield better, faster, and more cost-effective ways to prioritize drug development.<span>  </span>Biotech companies and experts have a number of nick names for such type of early small-sample sized experiments, pre-Phase I.<span>  </span>The aim of this exploratory INDs is to push more promising drugs into clinical trials and increase the odds of success.<span>  </span>However, IT and bioinformatics-as always- will play a vital role in achieving this and help with data organization, comparison and analysis.<span>  </span><span> </span>The information obtained from Phase 0 trials could provide vital information on pharmacokinetics, risk-benefit ratio, and the need for compound modification before moving on to more expensive and larger experimental models.<span>  </span>Thus, Phase 0 is not just another clinical trial or here to replace animal studies but an opportunity to develop a biomarker that can<span>  </span>get promising drugs into clinical trials faster, reject doomed drugs sooner, and invigorate the pharmaceutical pipelines once more.<span>  </span><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=23&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_23"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/phase-0-a-trial-before-trials/feed/</wfw:commentRss>
		</item>
		<item>
		<title>The First Single MicroRNA to Regulate Innate Immune Response</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/the-first-single-microrna-to-regulate-innate-immune-response/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/the-first-single-microrna-to-regulate-innate-immune-response/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:03:38 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/the-first-single-microrna-to-regulate-innate-immune-response/</guid>
		<description><![CDATA[A single microRNA - tiny RNAs that regulate the expression of protein-coding genes, microRNA-223, in mice controls the production and activation of granulocytes, a type of white blood cells essential for host defense against invading pathogens.  This is the first microRNA shown to play an essential role in the innate immune response, the results published [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span class="defaultlrg"><span style="font-family: 'Times New Roman','serif'">A single microRNA - tiny RNAs that regulate the expression of protein-coding genes, microRNA-223, in mice controls the production and activation of granulocytes, a type of white blood cells essential for host defense against invading pathogens.<span>  </span>This is the first microRNA shown to play an essential role in the innate immune response, the results published in the February issue of Nature.<span>   </span>Absence of microRNA-223 increased the production, differentiation and activation of granulocytes, causing tissue inflammation and damage. Increased production of microRNA-223 conversely may reduce inflammatory conditions.<span>  </span>This could have potential implications in the pathogenesis of inflammatory diseases such as acute lung respiratory disease syndrome as well as leukemia.<span>  </span>MicroRNA-223 is unique because its expression is entirely restricted to a specific branch of the immune system.<span>  </span>The study showed that microRNA-223 targets Mefc2, a transcription factor that promotes the expansion of granulocyte cell progenitors, and by knocking out Mefc2<span>  </span>some of the effects caused by microRNA-223 were eliminated.<span>  </span>In the study the mice which were modified to lack microRNA-223 expression had up to three times as many granulocytes in their bone marrow and blood. Moreover, the granulocytes matured more rapidly and then reacted more aggressively to stimuli. This increased activity caused tissue inflammation and damage within the lungs, the liver, muscle and kidneys.<span>  </span>Normally once the infection is cleared granulocytes usually migrate away and settle down.<span>   </span>However,<span>  </span>in the mutant mice they didn’t settle down after they were done fighting. Instead they continued an inflammatory response that did more damage.<span>  </span>Since many forms of leukemia express diminished levels of microRNA-223, the research team will investigate how silencing of this microRNA may contribute to the development of that disease.</span></span><span style="font-family: 'Times New Roman','serif'"><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=22&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_22"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/the-first-single-microrna-to-regulate-innate-immune-response/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Proteomic profiling more accurate than traditional biomarkers in identifying liver cancer</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/proteomic-profiling-more-accurate-than-traditional-biomarkers-in-identifying-liver-cancer/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/proteomic-profiling-more-accurate-than-traditional-biomarkers-in-identifying-liver-cancer/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:02:08 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/proteomic-profiling-more-accurate-than-traditional-biomarkers-in-identifying-liver-cancer/</guid>
		<description><![CDATA[Over a single decade, the incidence of liver cancer (hepatocellular carcinoma) increased from 1.8 to 2.5 per 100,000 patients, in large part due to a rise in the spread of hepatitis C virus.  A study appearing in the January 15, 2008 issue of Clinical Cancer Research demonstrates that a novel mass-spectrometry based form of proteomic [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span class="defaultlrg"><span style="font-size: 11pt">Over a single decade, the incidence of liver cancer (hepatocellular carcinoma) increased from 1.8 to 2.5 per 100,000 patients, in large part due to a rise in the spread of hepatitis C virus.<span>  </span>A study appearing in the January 15, 2008 issue of Clinical Cancer Research demonstrates that a novel mass-spectrometry based form of proteomic profiling is more accurate than traditional biomarkers in distinguishing liver cancer patients from patients with hepatitis C liver cirrhosis, particularly with regard to identifying patients with small, curable tumors.<span>  </span>The study could help lead to earlier diagnostic methods – and subsequent treatments &#8212; for liver cancer.<span>  </span>Although this particular proteomics technology, SELDI-TOF MS [surface enhanced laser desorption/ionization time of flight mass spectrometry] had already proven capable of identifying liver cancer in some limited studies, this was the first time that the technology was compared side-by-side with the clinical standard biomarker- Alpha fetoprotein (AFP)- in a cohort of patients at risk for developing the disease.<span>  </span>However, AFP not only fails to detect many early tumors, but it also lacks specificity. Consequently, elevated AFP levels could be indicators of not only cancer, but also of other liver diseases or even benign conditions, while on the other hand, many patients with small tumors will test negative for AFP.<span>  </span>Examining serum samples of 92 patients – including 51 patients with liver cirrhosis and 41 patients with liver cancer, and among the cancer patients, individuals with both large and small (less than 2 cm) tumors &#8212; by SELDI-TOF mass spectrometry, the investigators were able to identify an 11-protein signature that accurately discriminated between the cirrhosis and cancer patients.<span>  </span>The resulting diagnostic value – 74 percent sensitivity and 88 percent specificity – compared favorably with the diagnostic accuracy of AFP (73 percent sensitivity and 71 percent specificity) as well as with two other biomarkers currently in clinical development for liver cancer, AFP-L3 and PIVKA-IL.</span></span><span style="font-size: 11pt"> Surprisingly in patients with tumors less than 2 cm, where AFP identified only three, and AFP-L3 and PIVKA-II only one each, the 11-protein signature correctly identified seven of eight patients at this early stage of disease.<span>   </span>Thus biomarkers play a major role in all aspects of personalized medicine, not only in early disease detection, but also in outcome prediction and evaluation of therapeutic responses. This study provides strong evidence that serum contains early detection biomarkers and supports the notion that a combination of multiple biomarkers may prove more effective than individual biomarkers for diagnosis of liver cancer, as well as other cancers.<o:p></o:p></span></p>
<p class="MsoNormal" style="text-align: justify; line-height: normal"><o:p> </o:p></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=21&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_21"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/proteomic-profiling-more-accurate-than-traditional-biomarkers-in-identifying-liver-cancer/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Scientists Link Gene Locus to LDL Cholesterol Levels</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-link-gene-locus-to-ldl-cholesterol-levels/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-link-gene-locus-to-ldl-cholesterol-levels/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:01:43 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-link-gene-locus-to-ldl-cholesterol-levels/</guid>
		<description><![CDATA[A newly published study in the February 2008 issue of the Lancet throws light on how investigators from University of Cambridge report finding a novel gene locus associated with levels of LDL cholesterol in the blood.   The two main types of cholesterols are, low-density lipoprotein (LDL) and high-density lipoprotein (HDL) both of which carry cholesterol from [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify">A newly published study in the February 2008 issue of the Lancet throws light on how investigators from <a href="http://www.cam.ac.uk/" target="_blank"><span style="color: windowtext; text-decoration: none">University of Cambridge</span></a> report finding a novel gene locus associated with levels of LDL cholesterol in the blood.<span>   </span>The two main types of cholesterols are, <a href="http://en.wikipedia.org/wiki/Low-density_lipoprotein" title="Low-density lipoprotein"><span style="color: windowtext; text-decoration: none">low-density lipoprotein</span></a> (LDL) and <a href="http://en.wikipedia.org/wiki/High-density_lipoprotein" title="High-density lipoprotein"><span style="color: windowtext; text-decoration: none">high-density lipoprotein</span></a> (HDL) both of which carry cholesterol from and to the liver, respectively.<span>  </span>According to the <a href="http://en.wikipedia.org/wiki/Lipid_hypothesis" title="Lipid hypothesis"><span style="color: windowtext; text-decoration: none">lipid hypothesis</span></a>, abnormally elevated cholesterol levels (<a href="http://en.wikipedia.org/wiki/Hypercholesterolemia" title="Hypercholesterolemia"><span style="color: windowtext; text-decoration: none">hypercholesterolemia</span></a>) and abnormal ratio of LDL to HDL are associated with <a href="http://en.wikipedia.org/wiki/Cardiovascular_disease" title="Cardiovascular disease"><span style="color: windowtext; text-decoration: none">cardiovascular disease</span></a> by promoting <a href="http://en.wikipedia.org/wiki/Atheroma" title="Atheroma"><span style="color: windowtext; text-decoration: none">atheroma</span></a> development in arteries (<a href="http://en.wikipedia.org/wiki/Atherosclerosis" title="Atherosclerosis"><span style="color: windowtext; text-decoration: none">atherosclerosis</span></a>). This disease process leads to <a href="http://en.wikipedia.org/wiki/Myocardial_infarction" title="Myocardial infarction"><span style="color: windowtext; text-decoration: none">myocardial infarction</span></a> (heart attack), <a href="http://en.wikipedia.org/wiki/Stroke" title="Stroke"><span style="color: windowtext; text-decoration: none">stroke</span></a> and <a href="http://en.wikipedia.org/wiki/Peripheral_vascular_disease" title="Peripheral vascular disease"><span style="color: windowtext; text-decoration: none">peripheral vascular disease</span></a>.<span>  </span>As high LDL contributes to this process, it is termed &#8220;bad cholesterol&#8221;, while high levels of HDL offer a degree of protection and hence is termed the &#8220;good cholesterol&#8221;.<span>  </span>The balance can be redressed with exercise, a healthy diet, and medication.</p>
<p style="text-align: justify">In this study the scientists performed a genome-wide association study of LDL cholesterol concentrations. Their analysis used genetic data from 11,685 participants across five studies. They found evidence for a statistically significant link between LDL cholesterol and the chromosome region 1p13.3. The magnitude of the association was consistent across the studies examined and showed independent evidence for statistical association in each study, according to Cambridge team.<span>  </span>These results potentially offer insight into the biological mechanisms that lie behind the regulation of LDL cholesterol and might help in the discovery of novel therapeutic targets for cardiovascular disease.</p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=20&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_20"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-link-gene-locus-to-ldl-cholesterol-levels/feed/</wfw:commentRss>
		</item>
		<item>
		<title>HIV Vaccine:  New Targets found</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/hiv-vaccine-new-targets-found/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/hiv-vaccine-new-targets-found/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:01:20 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/hiv-vaccine-new-targets-found/</guid>
		<description><![CDATA[A team of researchers at Duke University in conjunction with the Center for  HIV/AIDS Vaccine Immunology (CHAVI), a seven year project funded by the National Institute of Allergy and Infectious Diseases, part of the National Institute of Health has identified three new gene variants in the DNA of 486 people infected with HIV that appear [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman','serif'">A team of researchers at Duke University in conjunction with the Center for<span>  </span>HIV/AIDS Vaccine Immunology (CHAVI), a seven year project funded by the National Institute of Allergy and Infectious Diseases, part of the National Institute of Health has identified three new gene variants in the DNA of 486 people infected with HIV that appear to have helped some of these patients fight off the virus and there by delay the onset of AIDS.<span>  </span></span><span style="font-family: 'Times New Roman','serif'">In this new analysis, patients with specific gene variants known as polymorphisms, in key immune system cells appear to be much better at controlling the proliferation of the virus after infection. </span><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman','serif'">The new findings may prove to be instrumental in the development of an HIV vaccine that works by boosting and aiding the body’s immune system to enhance the protective effects of one or more of these new gene variants.<span>  </span>The study the first large cooperative study with such major findings and is a definite boost in the search for a cure and the treatment of HIV/AIDS.<span>  </span>The vaccine if successful will prove to be of tremendous benefit in fighting off the disease in developing countries where the numbers of AIDS patients grow by thousands every day.<span>  </span><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=19&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_19"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/hiv-vaccine-new-targets-found/feed/</wfw:commentRss>
		</item>
		<item>
		<title>New Mechanisms of HBV Virulence</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/new-mechanisms-of-hbv-virulence/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/new-mechanisms-of-hbv-virulence/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 02:00:45 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/new-mechanisms-of-hbv-virulence/</guid>
		<description><![CDATA[This dreadful Hepatitis B Virus (HBV) is small in size. The genome of this virus is a partial double stranded circle. When made fully double stranded, this genome carries about 3000 base pairs, compared to 200 kilo base pairs of the genome of the smallpox virus. These 3000 base pairs encode an envelope protein, a [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'">This dreadful Hepatitis B Virus (HBV) is small in size. The genome of this virus is a partial double stranded circle. When made fully double stranded, this genome carries about 3000 base pairs, compared to 200 kilo base pairs of the genome of the smallpox virus. These 3000 base pairs encode an envelope protein, a core protein, a polymerase essential for virus replication and a very special X protein, named so because its function was unknown when it was named.<span>  </span></span><span style="font-family: 'Times New Roman','serif'">A new article in the World Journal of Gastroenterology by Dr. Kremsdorf and her associates addresses this question.<span>  </span>They have been trying to elucidate some of the functions of this X protein involved in liver pathogenesis during HBV infection. They first established a system in which the gene for X protein is permanently incorporated into mouse genome. With transgenic mice expressing X protein, they could research many different impacts of the protein on the host.<span>  </span>Their first exciting discovery was the inhibition of liver cell proliferation by X protein. This discovery raised a novel mechanism on how HBV causes liver diseases. Recently, the team further investigated how X protein inhibited the liver cell proliferation. These researchers studied the expression of 5376 genes in the transgenic mice using DNA microarray technique, which allowed simultaneous analysis of all 5376 genes. Their results indicated a decreased activity of those genes required for gene transcription and cholesterol metabolic pathway. This not only confirmed the previous observation, but showed how the molecular mechanism of how Hepatitis B virus X protein inhibits the liver regeneration.<span>  </span>These new discoveries should improve our knowledge of the implication of the viral proteins in the pathogenesis of HBV infection. This should allow participation in the design of new and more effective treatments for HBV patients.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=18&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_18"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/new-mechanisms-of-hbv-virulence/feed/</wfw:commentRss>
		</item>
		<item>
		<title>New ERK Pathway Proteins Related to CagA Induced Cancer</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/new-erk-pathway-proteins-related-to-caga-induced-cancer/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/new-erk-pathway-proteins-related-to-caga-induced-cancer/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:59:54 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/new-erk-pathway-proteins-related-to-caga-induced-cancer/</guid>
		<description><![CDATA[Cytotoxin-associated gene A protein (CagA) from type I H.pylori has been proved by epidemiological and experimental studies to be closely associated with the H.pylori induced gastric diseases, particularly gastric cancer. However, the precise role of CagA in cell function after H. pylori infection remains unclear and no study on exploring the global protein expression pattern [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'">Cytotoxin-associated gene A protein (CagA) from type I H.pylori has been proved by epidemiological and experimental studies to be closely associated with the H.pylori induced gastric diseases, particularly gastric cancer. However, the precise role of CagA in cell function after H. pylori infection remains unclear and no study on exploring the global protein expression pattern which can reflect host cells response to CagA has been reported.<span>   </span></span><span style="font-family: 'Times New Roman','serif'">A new research article to be published on January 28, 2008 in the World Journal of Gastroenterology attempts to addresses this question. The research team used a ProteinChip platform which is based on surface enhanced laser desorption / ionization time-of-flight mass spectrometry (SELDI-TOF-MS) technology, to study the global protein expression changes in AGS cells transfected with CagA gene.<span>  </span>As many researches had previously indicated a relationship among CagA, ERK/MAPK pathway activation and gastric cancer, the article further study the relationship of these protein expression differences and activation of ERK pathway by adding specific mitogen-activated protein kinase kinase (MEK) inhibitor during transfection.<span>   </span>When 16 proteins showed expression differences after CagA transfection, three proteins with molecular weights of 4 229, 8 162 and 9 084 Dalton were seen to have no expression differences under the treatment of MEK inhibitor, indicating they are downstream molecules of ERK1/2 in ERK/MAPK signaling pathway. Comparable information from Swiss-Prot/TrEMBL database indicates these three proteins may be related with cell apoptosis, cell antimicrobial defense, chemotactic function, cell proliferation, differentiation and carcinogenesis, and therefore have great potential to be identified as cancer-associated proteins in further research.<span>  </span>Given the high sensitivity and resolution in low molecular weight range of SELDI-ProteinChip technology, biomarkers discovered in this study are mainly low mass range and/or low abundance disease related proteins, which are difficult to detect by traditional techniques. These results demonstrate a new perspective of molecules involved in the CagA related signaling pathways, and hence may provide new targets for understanding of the biological function of CagA and new therapeutic targets. <o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=17&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_17"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/new-erk-pathway-proteins-related-to-caga-induced-cancer/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Inherited Individual Variations affect Gene Shuffling</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/inherited-individual-variations-affect-gene-shuffling/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/inherited-individual-variations-affect-gene-shuffling/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:57:24 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/inherited-individual-variations-affect-gene-shuffling/</guid>
		<description><![CDATA[The first large-scale, high-resolution study of human genetic recombination has found remarkably high levels of individual variation in genetic recombination, the process by which parents pass on a mosaic-like mixture of their genes.  In an article appearing February 1, 2008, in Science Express about 25,000 recombination events were identified to have occurred in the transmission [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span class="defaultlrg"><span style="font-size: 11pt">The first large-scale, high-resolution study of human genetic recombination has found remarkably high levels of individual variation in genetic recombination, the process by which parents pass on a mosaic-like mixture of their genes.<span>  </span>In an article appearing February 1, 2008, in Science Express about 25,000 recombination events were identified to have occurred in the transmission of the parental genomes to 364 offspring.<span>  </span>High-resolution maps created using multiple SNPs allowed them to provide the precise location of where these genetic exchanges occurred, and assess the differences in recombination rates between individuals.<span>  </span></span></span><span style="font-size: 11pt">Recombination occurs during meiosis, a special kind of cell division that takes place only in the testicles and ovaries. In the process of making sperm or egg cells, the parent-to-be takes the chromosomes inherited from each of his or her parents and reshuffles them, swapping parts of one chromosome for the matching segments of the other version of that same chromosome. The result is a reproductive cell with a mosaic, or patchwork, of genes, about half from each parent, but shuffled together into entirely new combinations. <span class="defaultlrg">This process leads to offspring having different combinations of genes than their parents and is thought to have many advantages. Errors in this recombination process during the production of sperm or egg cells underlie a variety of chromosomal abnormalities and can cause deletions of regions of the genome, miscarriage, or genetic disorders such as Down syndrome.<span>  </span>According to the study </span>chromosomes from the mother (not including the X chromosome) averaged around 40 recombination events per gamete, and those from the father had only 26. The authors confirm a previous finding that older mothers have more recombination events in the transmission of their genome to their offspring, while the father&#8217;s age has no such effect.<span>  </span>For both sexes, the majority of crossovers occur at genetic &#8220;hotspots,&#8221; small regions where genetic exchanges are unusually common. Although the overall rate of hotspot use was similar between the two sexes, a subset of hotspots seems to be used mainly by one sex of the other.<span>  </span>Strikingly the pattern of hotspot used varied among individuals, but seemed to be passed on from generation to generation&#8211;a heritable difference potentially pointing to differences in the recombination machinery among individuals.<span>  </span>The study uncovered tremendous variation in recombination rates over all genomic scales considered and in particular heritable variation in hotspot use.<span>  </span>Further studies will reveal the genetic basis of recombination-rate variation and the selective forces governing the evolution of recombination rates.<o:p></o:p></span></p>
<p style="text-align: justify"><span style="font-size: 11pt"><o:p> </o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=16&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_16"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/inherited-individual-variations-affect-gene-shuffling/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Cell Silences Genes on the Nuclear Edge</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/cell-silences-genes-on-the-nuclear-edge/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/cell-silences-genes-on-the-nuclear-edge/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:56:08 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/cell-silences-genes-on-the-nuclear-edge/</guid>
		<description><![CDATA[In the cell&#8217;s nucleus, neighborhoods matter. According to a new study from Howard Hughes Medical Institute (HHMI) researchers corralling certain genes at the edge of the nucleus, developing immune cells can control a gene&#8217;s activity and keep it switched off.  The finding comes as the result of researchers&#8217; efforts to understand how blood stem cells [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span class="defaultlrg"><span style="font-size: 11pt">In the cell&#8217;s nucleus, neighborhoods matter. According to a new study from Howard Hughes Medical Institute (HHMI) researchers corralling certain genes at the edge of the nucleus, developing immune cells can control a gene&#8217;s activity and keep it switched off.<span>  </span>The finding comes as the result of researchers&#8217; efforts to understand how blood stem cells mature into the various types of immune system cells that recognize invading bacteria and viruses.<span>   </span>Both B cells and T cells- immune cells of our body- mature from blood stem cells, and use the same set of proteins to organize activation of their receptor genes. But the set of genes that encodes B cell antibodies is different from the set of genes that encodes T cell receptors.<span>  </span>So given their developmental similarities, how do B and T cells avoid turning on the wrong genes?<span>  </span>In blood stem cells, the gene segments that encode both antibodies and T cell receptors are attached to the inside of the nuclear membrane.<span>  </span>The group had found that the antibody genes were being moved [toward the center of] the nucleus in B cells as they developed. In developing T cells, on the other hand, those same gene segments—which are never switched on—remained stuck to the membrane.<span>   </span>This organization probably creates areas whose genetic occupants could not be activated so that developing T cells might leave the unneeded antibody genes pinned against the nuclear membrane to avoid the potential for mistakes.<span>  </span></span></span><span style="font-size: 11pt">The team attached a binding site for the protein LacI to a gene that makes a cell resistant to the cell-killing drug hygromycin, and inserted the assembly into a mouse cell. The researchers chose the hygromycin resistance gene because it provided any easy way to test gene activity; when exposed to the drug, only cells with an active gene would survive.<span>  </span>In the same cells, they also activated LacI, which dutifully latched on. But in a bit of scientific trickery, the researchers first fused LacI to two other proteins. The first was green fluorescent protein which glows brightly and allowed the team to identify the assembly&#8217;s location. The second was a protein called emerin, which normally resides in the nuclear membrane. The results showed that regardless of the other proteins and DNA that the researchers had attached to it, the cell recognized that emerin belonged in the membrane, and dragged it there.<span>  </span>This shows that repositioning of genes and hence changing the neighborhood has consequences.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=15&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_15"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/cell-silences-genes-on-the-nuclear-edge/feed/</wfw:commentRss>
		</item>
		<item>
		<title>HMSH2 Gene Mutation in Colorectal Cancer</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/hmsh2-gene-mutation-in-colorectal-cancer/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/hmsh2-gene-mutation-in-colorectal-cancer/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:55:09 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/hmsh2-gene-mutation-in-colorectal-cancer/</guid>
		<description><![CDATA[It is estimated that about twenty percent Colorectal Cancer patients have a genetic component, and HNPCC is the most common autosomal dominant hereditary syndrome. A few Chinese HNPCC pedigrees were recently reported in the January 2008 issue of the World Journal of Gastroenterology because of their great significance for hereditary Colorectal Cancer. The article describes [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'">It is estimated that about twenty percent Colorectal Cancer patients have a genetic component, and HNPCC is the most common autosomal dominant hereditary syndrome. A few Chinese HNPCC pedigrees were recently reported in the January 2008 issue of the World Journal of Gastroenterology because of their great significance for hereditary Colorectal Cancer. </span><span style="font-family: 'Times New Roman','serif'">The article describes how five independent Chinese kindreds of HNPCC fulfilled the classical Amsterdam Criteria, as collected by researchers at the Sun Yet-san University in China. The research group has built on a Colorectal Cancer database since 1994 and the follow-up rate has consistently been above 90%. Eleven independent Chinese kindreds of HNPCC were collected by deep pedigree investigation until January and a few of them fulfilled the classical Amsterdam Criteria. To identify high-risk populations with HNPCC, the scientist tested the presence of the hMSH2 and hMLH1 mutations in these classical kindreds.<span>  </span>A novel hMSH2 gene mutation was found in one HNPCC kindred. In the kindred, there were four colorectal carcinoma patients in two successive generations, and three of them were diagnosed before the age of 45. The proband developed endometrial carcinoma at the age of 61, bladder carcinoma at 66 years and Colorectal Cancer at the age of 72, while his father got bladder carcinoma at the age of 70. In addition, one proband in the daughter had Colorectal Cancer<span>  </span>at the age of 34 and died of synchronous hepatic metastasis. In the kindred, gene testing was performed on ten family members and four of them were found to have a mutation in hMSH2 at position A1808G. The mutation sequence variant was in exon 12 of hMSH2 gene, and was identified as a missense mutation. It was a single nucleotide substitution of c.1808A to G which resulted in Asp 603 Gly of hMSH2. Three of them with this mutation had developed Colorectal Cancer and one had no colorectal disease and was still in follow-up. The results of this study indicate that molecular pathological tests should be performed to identify individuals with hereditary non-polyposis Colorectal Cancer and at-risk family members of HNPCC. Although the novel mutation reported by the research team has not been confirmed as a germline mutation yet, it may be an important factor for Colorectal Cancer development in kindreds. Close follow-up and intensive surveillance using colonoscopy should be performed for those high risk family members. <o:p></o:p></span></p>
<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=14&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_14"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/hmsh2-gene-mutation-in-colorectal-cancer/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Scientists Develop Novel Fluorescent Proteins for Live Cell Imaging, Biosensor Design</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-develop-novel-fluorescent-proteins-for-live-cell-imaging-biosensor-design/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-develop-novel-fluorescent-proteins-for-live-cell-imaging-biosensor-design/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:54:42 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-develop-novel-fluorescent-proteins-for-live-cell-imaging-biosensor-design/</guid>
		<description><![CDATA[The February issue of Nature Biotechnology talks about the newly developed “fluorogen activating proteins&#8221; (FAPs) that will become a key component of novel molecular biosensor technology being created at Carnegie Mellon.  The FAP is a specialized single chain antibody (scFv), a recombinant fragment of full-size antibody proteins that the human immune system uses to identify [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'">The February issue of Nature Biotechnology talks about <span class="defaultlrg">the newly developed “fluorogen activating proteins&#8221; (FAPs) that will become a key component of novel molecular biosensor technology being created at Carnegie Mellon.<span>  </span>The FAP is a specialized single chain antibody (scFv), a recombinant fragment of full-size antibody proteins that the human immune system uses to identify intruders like bacteria or viruses.  These FAP can be used to monitor biological activities of individual proteins and other biomolecules within living cells in real time.<span>  </span>The FAPs are designed to emit fluorescent light only when bound to a fluorogen -malachite green and thiazole orange- an otherwise non-fluorescent dye added by the scientists. This feature will allow biologists to track proteins on the cell surface and within living cells in very simple and direct ways, eliminating cumbersome experimental steps.<span>  </span>Researchers say the fluorogen activating proteins are particularly useful for developing molecular biosensors, because FAPs allow researchers to not only see where the target protein is within the cell, but also detect color changes when it becomes fluorescent. Such color changes may reflect changes in the local environment of the protein, and allow quantitative sensing in real time of the biological activity of proteins and biomolecules that are in close proximity to each other.<span>  </span>Scientists also can design fluorogens that can enter the cell and fluorogens that can&#8217;t. When used with fluorogens that are excluded from the cell, the FAP technology provides an exceptionally selective biosensor for proteins at the outside of the cell surface.<span>  </span>The ultimate goal is to put molecular biosensors based on FAP technology inside cells.<span>  </span>Thus FAPs are the essential first step in developing molecular biosensors that will monitor dynamic changes occurring within cells</span><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=13&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_13"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/scientists-develop-novel-fluorescent-proteins-for-live-cell-imaging-biosensor-design/feed/</wfw:commentRss>
		</item>
		<item>
		<title>A New Recipe for Next Year’s Flu Shot</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/a-new-recipe-for-next-year%e2%80%99s-flu-shot/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/a-new-recipe-for-next-year%e2%80%99s-flu-shot/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:54:19 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/a-new-recipe-for-next-year%e2%80%99s-flu-shot/</guid>
		<description><![CDATA[Next year&#8217;s flu vaccine is getting a complete overhaul to provide protection against three new and different influenza strains for better protection than this year&#8217;s version.   Advisers to the Food and Drug Administration unanimously supported the change last week, echoing an earlier decision by the World Health Organization. It&#8217;s a highly unusual move: Seldom are [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'">Next year&#8217;s flu vaccine is getting a complete overhaul to provide protection against three new and different influenza strains for better protection than this year&#8217;s version.<span>   </span>Advisers to the <span class="yshortcuts">Food and Drug Administration</span> unanimously supported the change last week, echoing an earlier decision by the <span class="yshortcuts">World Health Organization</span>. It&#8217;s a highly unusual move: Seldom are more than one or two strains swapped out from one year to the next.<span>  </span>The question that remains is whether vaccine manufacturers can make such a big change in time to produce more than 100 million doses by the fall.<span>   </span>A strain called <span class="yshortcuts">Brisbane</span>/10 that&#8217;s responsible for much of this season&#8217;s flu grows very slowly in the laboratory, potentially complicating already laborious vaccine production.<span>  </span>The flu vaccine is reformulated every year to keep up with the fast-evolving influenza virus, and this year the CDC made a rare wrong bet on which strains would cause the most disease. The flu season got off to a slow start, but it rocketed in mid-January as some new strains arrived — and the <span class="yshortcuts">CDC</span> found the vaccine is a good match for only about 40 percent of the virus now spreading in the U.S.<span>  </span>That Brisbane/10 strain is the big culprit, one first spotted in <span class="yshortcuts">Australia</span> late last winter, too late for scientists to include in this year&#8217;s vaccine recipe even if they had predicted it would gain steam for reasons mentioned above.<span>  </span>Flu viruses come in different strains that constantly mutate, until one that few people have immunity against emerges and is able to spread widely. Each year&#8217;s vaccine contains protection against two varieties of the harsher Type A flu — subtypes known as H1N1 and H3N2 — and one from the more benign Type B family.<o:p></o:p></span></p>
<p style="text-align: justify"><span style="font-size: 11pt">CDC and international authorities expect Brisbane/10, a version of the H3N2 flu, to still be lingering aroud next year. They predict a second new Type A strain, known as H1N1/Brisbane/59, also will hit, along with a newer Type B/<span class="yshortcuts">Florida</span> strain.<span>  </span>The recipe must be set about eight months before manufacturers start shipping doses because <span class="yshortcuts">flu vaccine production</span> is so complex. Health authorities come up with seed stocks of the virus strains that manufacturers then must grow in chicken eggs.<span>  </span>As for the rest of this winter, the CDC says the current vaccine should provide some protection, perhaps resulting in a milder case of flu than if someone hadn&#8217;t been inoculated. Every year, the flu infects up to 20 percent of the population, hospitalizes 200,000 people and kills 36,000.<o:p></o:p></span></p>
<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=12&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_12"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/a-new-recipe-for-next-year%e2%80%99s-flu-shot/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Environmental Epigenetics - Preventing and treating disease</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/environmental-epigenetics-preventing-and-treating-disease/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/environmental-epigenetics-preventing-and-treating-disease/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:53:55 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/environmental-epigenetics-preventing-and-treating-disease/</guid>
		<description><![CDATA[Literally meaning “above the genome,” the epigenome refers to differences in gene expression that are inherited without changing the sequence of DNA.  New research on environmental influences on health and disease has begun to shed light on why genetically identical individuals demonstrate different characteristics, such as susceptibility to disease.  Scientists have found that environmental exposure [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span class="defaultlrg"><span style="font-size: 11pt">Literally meaning “above the genome,” the epigenome refers to differences in gene expression that are inherited without changing the sequence of DNA.<span>  </span>New research on environmental influences on health and disease has begun to shed light on why genetically identical individuals demonstrate different characteristics, such as susceptibility to disease.<span>  </span>Scientists have found that environmental exposure to nutritional, chemical and physical factors can alter the epigenome. </span></span><span style="font-size: 11pt"><span>  </span>Several studies have been published involving metastable epialleles, which are alternate forms of a gene that are expressed due to epigenetic modifications linked to maternal nutrition and environmental exposure during very early development. Simple dietary changes have been shown to protect against the negative effects of environmental toxins on the fetal epigenome.<span>  </span>Embryos are vulnerable to environmentally-induced epigenetic alterations early in their development thus it is necessary to analyze the timing of exposure in order to fully understand environmental epigenomics. <o:p></o:p></span></p>
<p style="text-align: justify"><span style="font-size: 11pt">The advent of bioinformatics has allowed researchers to more readily search the entire mouse genome for imprinted genes, but the real power of this approach has been recently demonstrated in its application to the human genome. While 2.5 percent of the mouse genome contains potentially imprinted genes, only 0.75 percent of the human genome is predicted to be imprinted. This means that the mouse genome may not be a suitable model for assessing human disease risk due to epigenetic mutations in imprinted genes. <span> </span>It is necessary to develop bioinformatic models that can identify metastable epialleles in order to characterize all of the genes susceptible to environmental influences. <o:p></o:p></span></p>
<p style="text-align: justify"><span style="font-size: 11pt">With the identification of epigenetically unstable locations in the human genome, it will be possible to screen individuals at an early age for epigenetically susceptible diseases, allowing for closer monitoring and more frequent follow-up. In addition, unlike genetic mutation, epigenetic profiles are potentially reversible. Therefore, epigenetic approaches for prevention and treatment, such as nutritional supplementation and/or pharmaceutical therapies may be developed to counteract negative epigenomic profiles.<span>  </span>The future of epigenomics therapy holds tremendous potential for not only individualized health care but also for population-wide disease diagnostic, screening, and prevention strategies.<o:p></o:p></span></p>
<p class="MsoNormal" style="text-align: justify; line-height: normal"><strong><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></strong></p>
<p class="MsoNormal" style="text-align: justify; line-height: normal"><o:p> </o:p></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=11&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_11"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/environmental-epigenetics-preventing-and-treating-disease/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Chemical Efficiency Fragments</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/chemical-efficiency-fragments/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/chemical-efficiency-fragments/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:53:23 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/chemical-efficiency-fragments/</guid>
		<description><![CDATA[In the recent times biotech and pharmas often screen libraries of small molecules to discover novel drugs.  Such libraries often tend to be enormous in size – some including more than one million compounds.  In fact, both the libraries and the molecules seem way too big or too complicated when it comes to the developmental [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'">In the recent times biotech and pharmas often screen libraries of small molecules to discover novel drugs.<span>  </span>Such libraries often tend to be enormous in size – some including more than one million compounds.<span>  </span>In fact, both the libraries and the molecules seem way too big or too complicated when it comes to the developmental and optimization chemistry that follows discovery.<span>  </span>Thus many companies have begun to focus on even smaller molecules called fragments.<span>  </span>These fragments are small pieces of molecules- mostly a few hundred daltons in size.<span>  </span>These fragments are then used to study their binding properties and mannerisms.<span>  </span>After this the fragments are stitched together in a novel manner to create new compounds and hence new drugs.<span>  </span>Many scientists turn to computer software to simulate many of the chemical possibilities involved in the binding and combination of numerous fragments and create a virtual series of experiments that may not be accomplished within a reasonable amount of time and energy by humans.<span>  </span>The process reduces the amount of chemistry that must be done, often because companies end up pursuing fewer, and hopefully more-promising, potential drugs.<span>  </span>The other key to using such fragments is that they leave an enormous amount of room to grow.<span>  </span>As molecules move along the developmental pipeline they tend to get bigger; something is added for solubility here and absorption there.<span>  </span>Consequently, even a small molecule can get too big to work like a drug.<span>  </span>Fragments on the other hand start out small and maintain a comparatively smaller size, an ideal drug-like size, even after multiple linkages are added to make the final product.<span>  </span><o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=10&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_10"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/chemical-efficiency-fragments/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Protein Shines Light on Cancer Response to Therapy</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/protein-shines-light-on-cancer-response-to-therapy/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/protein-shines-light-on-cancer-response-to-therapy/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:52:59 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/protein-shines-light-on-cancer-response-to-therapy/</guid>
		<description><![CDATA[A novel technique that particularly “tags” tumors responding to chemotherapy may offer a new strategy for determining a cancer treatment’s effectiveness within days of starting treatment, this is according to a new study done at Vanderbilt-Ingram Cancer Center and was published in Nature Medicine.   This new improved monitoring of tumor response could help customize patient [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'">A novel technique that particularly “tags” tumors responding to chemotherapy may offer a new strategy for determining a cancer treatment’s effectiveness within days of starting treatment, this is according to a new study done at Vanderbilt-Ingram Cancer Center and was published in Nature Medicine.<span>   </span>This new i</span><span style="font-family: 'Times New Roman','serif'">mproved monitoring of tumor response could help customize patient treatment –now the popular term patient-specific care- and also speed up the development of new cancer drugs.<span>  </span></span><span style="font-family: 'Times New Roman','serif'"><span> </span>T</span><span style="font-family: 'Times New Roman','serif'">he researchers in the study have identified a small protein that specifically recognizes tumors responding to chemotherapy. The new protein, when tagged with a light-emitting molecule, can be used to visualize cancer response in mice within two days of therapy.<span>  </span>In the present day and age the response to chemotherapy is determined by measuring changes in tumor size with imaging techniques like CT (computed tomography) and MRI (magnetic resonance imaging).<span>  </span>In addition it often takes up to two to three months of cancer therapy before we can determine whether the therapy has been effective for a patient.<span>   </span>If we can get that answer within one to two days, we can switch that patient to an alternative regimen very quickly, and be able to provide the correct treatment to which that particular patient will respond much faster.<span>  </span>Rapid assessment of tumor response is especially important now given recent advances in molecular targeted therapies – chemotherapy medications that specifically interfere with the growth and proliferation of cancer cells while avoiding damage to healthy cells.<span>   </span>There are so many molecular targeted drugs to choose from, and that number is growing every year, so we are now at a point where a patient can be switched from one regimen to another and such new protein tags will be key tools to help make the decision to use an alternative therapy with the patient.<span>  </span>To find a rapid and noninvasive method to assess cancer response to these therapies, the researchers focused not on tumor size, but molecular and cellular changes in responding tumors.<span>   </span>From an array of billions of protein fragments the team identified one that specifically bound to tumors responding to therapy. To this peptide, they attached a light-emitting molecule and injected these labeled peptides into mice that had been implanted with human tumors.<span>  </span>Using specialized imaging methods that detect light in the near-infrared range and saw that tumors responding to therapy were lighting up compared to the non-responding tumors. The peptide detected response in a wide range of tumors – brain, lung, colon, prostate and breast –<span>  </span>all within two days of initiation of treatment.<span>   </span>The next step will be to move the technology into humans. However, the imaging technique used in mice (near-infrared) is not sensitive enough to penetrate deeply into human tissues, so the researchers are adapting the technology to an imaging modality commonly used in humans, called PET (positron emission tomography).<span>   </span>This imaging peptide is predicted to enter clinical trials within about 18 months to see if it is possible to image responding cancers in humans as well as we can in mice.<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom: 0.0001pt; text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-align: justify; line-height: normal"><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'"><o:p> </o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=9&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_9"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/protein-shines-light-on-cancer-response-to-therapy/feed/</wfw:commentRss>
		</item>
		<item>
		<title>The Search for better Cancer Biomarkers</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/the-search-for-better-cancer-biomarkers/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/the-search-for-better-cancer-biomarkers/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:52:31 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/the-search-for-better-cancer-biomarkers/</guid>
		<description><![CDATA[Today using tests based on histopathology or other devices most of tumors can be detected.  Armed with the latest generation of genomic and proteomic tools though, researchers are now on a quest to discover new and better biomarkers.  The recent surge of interest in biomarkers is being driven by the increasing pressure to shorten drug [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span style="font-family: 'Times New Roman','serif'">Today using tests based on histopathology or other devices most of tumors can be detected.<span>  </span>Armed with the latest generation of genomic and proteomic tools though, researchers are now on a quest to discover new and better biomarkers.<span>  </span>The recent surge of interest in biomarkers is being driven by the increasing pressure to shorten drug development times.<span>  </span>In traditional trials mortality is often used as an endpoint, which can take many years.<span>  </span>However if a biomarker(s) is found that is predictive of mortality then the wait time to evaluate the effectiveness of a particular drug is cut back tremendously.<span>  </span>For this to happen many researchers have begun a collaborative effort applying large-scale genome sequencing technology to discover new genes involved in cancer pathogenesis, development and prediction.<span>  </span>While the field’s current mood may be buoyant, history suggests that a typical biomarker discovery has taken decades to move from research lab to clinic.<span>  </span>Shortening that gestation period will require more than purely scientific collaboration.<span>  </span>So if a biomarker seems to provide a reliable prediction of tumor growth in animal models and a small group of patients the next step is to perform a large scale trial with many disease-free controls and those with the disease.<span>  </span>Even if a biomarker distinguishers diseased from healthy patients in the initial trial, the biomarker needs to be tested across other laboratories to see if the data is reproducible, accurate, and verifiable.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=8&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_8"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/the-search-for-better-cancer-biomarkers/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Expression Pathology Used to Identifying Biomarkers of Lung Cancer Metastasis and Survival</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/expression-pathology-used-to-identifying-biomarkers-of-lung-cancer-metastasis-and-survival/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/expression-pathology-used-to-identifying-biomarkers-of-lung-cancer-metastasis-and-survival/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:52:00 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/expression-pathology-used-to-identifying-biomarkers-of-lung-cancer-metastasis-and-survival/</guid>
		<description><![CDATA[Researchers at Tokyo Medical University used tissue microproteomics technologies to identified protein biomarkers associated with lung cancer metastasis, which were then further studied for correlation to clinical outcomes. The researchers used laser microdissection slides to analyze formalin-fixed paraffin-embedded (FFPE) tissue samples by mass spectrometry. A novel combination of technologies has helped in proteomic discovery and [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify"><span class="defaultlrg"><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman','serif'">Researchers at Tokyo Medical University used tissue microproteomics technologies to identified protein biomarkers associated with lung cancer metastasis, which were then further studied for correlation to clinical outcomes. The researchers used laser microdissection slides to analyze formalin-fixed paraffin-embedded (FFPE) tissue samples by mass spectrometry. </span></span><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman','serif'">A novel combination of technologies has helped in proteomic discovery and the analysis of previously unusable archived tissue, first in a semi-quantitative manner and then in a more targeted manner to focus on specific individual proteins.<span>   </span>This method has now demonstrated its potential utility as an indicator of the stage of disease and predictor of patient survival.<span>  </span>&#8220;FFPE tissue archives represent an extraordinary resource for mining protein biomarkers associated with differential clinical outcomes,&#8221; said David Krizman, PhD, EPI&#8217;s Chief Scientific Officer. &#8220;However, detailed proteomic analysis by mass spectrometry of specific cellular features of these samples has, until recently, not been feasible.&#8221;<span>  </span>This new study undoubtedly demonstrates how the new technique has opened archived tissue to discovery and validation of protein biomarkers of differential pathologies and clinical outcomes. <o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=7&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_7"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/expression-pathology-used-to-identifying-biomarkers-of-lung-cancer-metastasis-and-survival/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Combination antiretroviral therapy beneficial in virologic failure</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/combination-antiretroviral-therapy-beneficial-in-virologic-failure/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/combination-antiretroviral-therapy-beneficial-in-virologic-failure/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:51:35 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/combination-antiretroviral-therapy-beneficial-in-virologic-failure/</guid>
		<description><![CDATA[Even when HIV-infected patients have profound immunosuppression and extensive viral resistance, combination antiretroviral therapy (cART) still provides benefits over therapy interruption, according to a report in Clinical Infectious Diseases.  Dr. Kousignian and colleagues in the Clinical Epidemiology Group of the French Hospital Database on HIV compared the rate of clinical progression in patients with a [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span style="font-size: 11pt">Even when HIV-infected patients have profound immunosuppression and extensive viral resistance, combination antiretroviral therapy (cART) still provides benefits over therapy interruption, according to a report in Clinical Infectious Diseases.<span>  </span>Dr. Kousignian and colleagues in the Clinical Epidemiology Group of the French Hospital Database on HIV compared the rate of clinical progression in patients with a CD4 cell count below 200 cells and with either detectable or undetectable viral load who either continued cART or interrupted cART.<span>  </span>They found that the rate of AIDS-defining events (ADEs) was 14.5 cases per 100 patient-years among patients who continued cART compared with 18.5 cases per 100 patient-years among patients who had an interruption of cART. Furthermore, within each group, the rates for new ADEs were higher in patients with CD4 cell counts below 50 cells than in the 50-200.<span>   </span>The report also indicates that in both groups, ADE rates were significantly higher in patients with baseline viral loads above 30,000 copies/mL than in patients with lower baseline viral loads.<span>   </span>The overall risks of a new ADE were 22% and 62% lower in patients with detectable viral load and in patients with undetectable viral load on cART, respectively, than in patients with cART interruption. Thus for HIV patients maintaining a failing regimen is preferable to interrupting it because cART still reduces the risk of a new AIDS-defining event, and still protects against apparition of AIDS opportunistic infection.<span>  </span>In further studies it would be useful to evaluate the different regimens in these patients, including single-drug versus combination therapy, and combinations based on nucleoside reverse transcriptase inhibitors versus nonnucleoside reverse transcriptase inhibitors or protease inhibitors. <o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=6&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_6"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/combination-antiretroviral-therapy-beneficial-in-virologic-failure/feed/</wfw:commentRss>
		</item>
		<item>
		<title>The Protein Conferring Resistance to Antibiotics Found</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/the-protein-conferring-resistance-to-antibiotics-found/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/the-protein-conferring-resistance-to-antibiotics-found/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:51:10 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/2008/03/11/the-protein-conferring-resistance-to-antibiotics-found/</guid>
		<description><![CDATA[Scientists in Paris have solved the structure of the proteins that allow bacteria to gain resistance to multiple antibiotics.  The growing resistance to multiple bacteria –ranging from TB to MRSA – has sprung an enormous amount of attention in the healthcare community and the general public.  A team of scientists from the University Paris Descartes [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify"><span class="defaultlrg"><span>Scientists in Paris have solved the structure of the proteins that allow bacteria to gain resistance to multiple antibiotics.<span>  </span>The growing resistance to multiple bacteria –ranging from TB to MRSA – has sprung an enormous amount of attention in the healthcare community and the general public.<span>  </span></span></span>A team of scientists from the University Paris Descartes have recently claimed to have solved the structure of two proteins that allow bacteria to gain resistance to multiple types of antibiotics, according to a report in EMBO reports this month. This work provides new clues as to how bacteria adapt to resist antibiotics and how to design new drugs that counteract this defense mechanism.</p>
<p style="text-align: justify">Frédéric Dardel and colleagues crystallized both the narrow and broad-spectrum resistance forms of the antibiotic-modifying acetyltransferase enzyme. Their new study reveals that this particular enzyme has a flexible active site that can evolve to accommodate new antibiotics, allowing the bacteria to break them down and render them useless in killing off an infection. This type of enzyme is now carried by millions of bacteria struggling for survival in the antibiotic age.</p>
<p style="text-align: justify">More importantly, the research provides new insight for the design of new antibiotics that could evade this form of resistance, and new inhibitors that would extend the effectiveness of current antibiotics, both of which could help in the fight against the deadly infections becoming more frequent in hospitals.</p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=5&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_5"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/the-protein-conferring-resistance-to-antibiotics-found/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Safety of Albumin Administration in Critically Ill Patients</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/03/11/safety-of-albumin-administration-in-critically-ill-patients/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/03/11/safety-of-albumin-administration-in-critically-ill-patients/#comments</comments>
		<pubDate>Tue, 11 Mar 2008 01:49:33 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/?p=4</guid>
		<description><![CDATA[The Food and Drug Administration (FDA) is issuing this notice in order to update an earlier correspondence and revise our previous advice regarding the safety of albumin administration in critically ill patients. This action is being taken following FDA’s review of recent studies on the safety of albumin, and is consistent with recommendations made on [...]]]></description>
			<content:encoded><![CDATA[<p class="MsoNormal" style="text-align: justify; line-height: 200%"><span style="font-family: 'Times New Roman','serif'">The Food and Drug Administration (FDA) is issuing this notice in order to update an earlier correspondence and revise our previous advice regarding the safety of albumin administration in critically ill patients. This action is being taken following FDA’s review of recent studies on the safety of albumin, and is consistent with recommendations made on March 17, 2005 by members of the Blood Products Advisory Committee (BPAC).<span>  </span>In May 2004, the New England Journal of Medicine published the SAFE study, the largest randomized controlled trial to date to have addressed the safety of albumin (<em>N Engl J Med</em> 2004;350:2247-56). In this trial, 6997 critically ill subjects were randomized to receive either 4% albumin or normal saline for the treatment of hypovolemia.<span>  </span>The results indicated that for patients in the general ICU population requiring fluid resuscitation, the mortality rate of those who receive albumin is the same as for those who receive saline (relative risk of mortality 0.99; 95% confidence interval: 0.91, 1.09). Secondary analyses of pre-specified subgroups of patients with ARDS, severe sepsis, and trauma were consistent overall with this finding. Two additional findings deserve mention. First, results of an exploratory analysis of trauma patients with concomitant traumatic brain injury showed increased mortality in the albumin treatment arm (relative risk of mortality 1.36; 95% confidence interval 0.99, 1.86). Second, a higher survival rate was observed in the albumin treated patients with severe sepsis, but since this finding was not statistically significant (p=0.09), its clinical significance remains uncertain.<o:p></o:p></span></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=4&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_4"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/03/11/safety-of-albumin-administration-in-critically-ill-patients/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Albumin: It’s role and Implications in Disease</title>
		<link>http://biotechsupportgroup.net/proteomics/2008/01/28/albumin-it%e2%80%99s-role-and-implications-in-disease/</link>
		<comments>http://biotechsupportgroup.net/proteomics/2008/01/28/albumin-it%e2%80%99s-role-and-implications-in-disease/#comments</comments>
		<pubDate>Mon, 28 Jan 2008 18:28:26 +0000</pubDate>
		<dc:creator>BSG</dc:creator>
		
		<category><![CDATA[Proteomics and Medicine]]></category>

		<category><![CDATA[Albumin]]></category>

		<guid isPermaLink="false">http://biotechsupportgroup.net/proteomics/?p=3</guid>
		<description><![CDATA[Albumin  is a simple molecule but takes part in various important biochemical  and physiologic processes occurring daily in the human body.  It  is one of the key components of the blood transport system and regulates  the transport of fatty acid molecules, bilirubin, tryptophan, calcium,  steroid hormones and other physiologic compounds. [...]]]></description>
			<content:encoded><![CDATA[<p><font face="Times New Roman" size="3">Albumin  is a simple molecule but takes part in various important biochemical  and physiologic processes occurring daily in the human body.  It  is one of the key components of the blood transport system and regulates  the transport of fatty acid molecules, bilirubin, tryptophan, calcium,  steroid hormones and other physiologic compounds. Various factors such  as association with metabolites, toxins, pharmacological drugs etc.  are able to cause conformational changes in the Human Serum Albumin  (HAS) molecule which can lead to transport malfunctions.    The deficiency of albumin in the human body is also detrimental and  can be involved in the development of some common pathological processes.</font></p>
<p align="justify">      <font face="Times New Roman" size="3">Serum  albumin has a long half-life of approximately 15 to 20 days, with an  average of 4% degraded per day.  Due to slow turnover, the <a name="0.1_01000001"></a> serum albumin is not considered to be a good indicator of <em>acute or  mild</em> liver dysfunction. Therefore only minimal changes in the serum  albumin are seen in acute liver conditions such as viral hepatitis,  drug-related hepatoxicity, and obstructive jaundice. Albumin levels  &lt;3 g/dL should raise the possibility of chronic liver disease in  patients with hepatitis. </font></p>
<p align="justify">      <font face="Times New Roman" size="3">Hypoalbuminemia,  is therefore more common in <em>chronic</em> liver disorders such as cirrhosis  and usually reflects severe liver damage and decreased albumin synthesis.  One exception is the patient with ascites in whom synthesis may be normal  or even increased, but laboratory levels of albumin are low because  of the increased volume of distribution.  However, hypoalbuminemia  is not specific for liver disease and may occur in protein malnutrition  of any cause, as well as protein-losing enteropathies, nephrotic syndrome,  and chronic infections that are associated with prolonged increases  in levels of serum interleukin 1 (IL-1) and/or tumor necrosis factor  (TNF), and cytokines that inhibit albumin synthesis. Serum albumin is  therefore not measured for screening in patients in whom there is no  suspicion of liver disease.</font></p>
<p align="justify">      <font face="Times New Roman" size="3">Thus  the varied roles and functions of albumin in day-to-day living make  it a vital entity to be studied for tapping its potential in diagnosing,  healing or even curing.</font></p>
<span class="akst_link"><a href="http://biotechsupportgroup.net/proteomics/?p=3&amp;akst_action=share-this"  title="E-mail this, post to del.icio.us, etc." id="akst_link_3"  class="akst_share_link">Share This</a>
</span>]]></content:encoded>
			<wfw:commentRss>http://biotechsupportgroup.net/proteomics/2008/01/28/albumin-it%e2%80%99s-role-and-implications-in-disease/feed/</wfw:commentRss>
		</item>
	</channel>
</rss>
